publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2019

  1. Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation
    Wendte, Jered M, Zhang, Yinwen, Ji, Lexiang, Shi, Xiuling, Hazarika, Rashmi R, Shahryary, Yadollah, Johannes, Frank, and Schmitz, Robert J
    Elife 2019
  2. The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
    Hofmeister, Brigitte T, Denkena, Johanna, Colomé-Tatché, Maria, Shahryary, Yadollah, Hazarika, Rashmi, Grimwood, Jane, Mamidi, Sujan, Jenkins, Jerry, Grabowski, Paul P, Sreedasyam, Avinash, and others,
    BioRxiv 2019

2020

  1. AlphaBeta: computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
    Shahryary, Yadollah, Symeonidi, Aikaterini, Hazarika, Rashmi R, Denkena, Johanna, Mubeen, Talha, Hofmeister, Brigitte, Van Gurp, Thomas, Colomé-Tatché, Maria, Verhoeven, Koen JF, Tuskan, Gerald, and others,
    Genome biology 2020
  2. MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data
    Shahryary, Yadollah, Hazarika, Rashmi R, and Johannes, Frank
    BMC genomics 2020
  3. A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
    Hofmeister, Brigitte T, Denkena, Johanna, Colomé-Tatché, Maria, Shahryary, Yadollah, Hazarika, Rashmi, Grimwood, Jane, Mamidi, Sujan, Jenkins, Jerry, Grabowski, Paul P, Sreedasyam, Avinash, and others,
    Genome biology 2020

2021